Transcriptome QTLs

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By Tuuli

Aims of the analyses

  • Catalogue genetic variants that associate to different transcriptome phenotypes (gene expression levels, splicing ratios, etc)
  • Understand how genetic control of various parts of transcriptome works together: e.g are eQTLs and sQTLs often overlapping, do they interact with each other, do variants that affect miRNA-target interaction also end up affecting the target gene expression‚Ķ
  • Do SNPs, indels and SVs have different effects?
  • Describe population sharing of tQTLs
  • Understand the cellular mechanisms that drive the genetic associations by functional annotation of the variants

Children Pages

Pending: other transcriptome phenotypes, SNP/indel/SV effects, functional annotation, population sharing...

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